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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
101
ChIP-seq
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
101
DNA binding
24
Transcription
5
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
60
November, 2017
18
July, 2019
18
May, 2019
14
October, 2017
12
February, 2020
12
October, 2019
2
March, 2020
1
February, 2023
Available data
106
bam
84
bigWig
65
bed narrowPeak
64
tagAlign
62
bigBed narrowPeak
26
tsv
15
fastq
7
bed broadPeak
3
bed bed3+
3
bigBed broadPeak
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
137
Homo sapiens
Biosample type
124
tissue
13
primary cell
Organ
865
pancreas
725
liver
642
connective tissue
477
adipose tissue
456
epithelium
298
heart
258
kidney
199
vasculature
196
blood vessel
159
bone element
137
brain
131
artery
71
limb
68
blood
68
bodily fluid
54
eye
50
musculature of body
33
nerve
29
embryo
22
spleen
20
lung
16
skeleton
14
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
137
AMP
Genome assembly (visualization)
78
GRCh38
50
hg19
Lab
137
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
3
missing controlled_by
target.investigated_as!
narrow histone mark
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
137 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
16
1
1
1
layer of hippocampus
15
temporal lobe
10
1
1
caudate nucleus
10
1
substantia nigra
10
1
+ See 22 more…
primary cell
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
cerebellar granule cell
2
Purkinje cell
1
+ See 1 more…
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