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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
28
ChIP-seq
4
DNase-seq
single cell RNA-seq
Assay category
56
Transcription
49
DNA accessibility
28
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
22
October, 2019
3
July, 2019
3
May, 2019
2
February, 2020
2
June, 2019
Available data
96
bam
79
bigWig
68
bed narrowPeak
56
tsv
19
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
133
Homo sapiens
Biosample type
66
cell line
65
tissue
2
primary cell
Organ
799
pancreas
730
liver
647
connective tissue
479
adipose tissue
405
epithelium
275
kidney
235
heart
204
vasculature
199
blood vessel
166
brain
159
bone element
133
artery
107
limb
82
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
18
ureter
16
skeleton
16
vein
11
lung
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
133
AMP
Genome assembly (visualization)
122
GRCh38
87
hg19
Lab
133
AMP-T2D consortium
target.investigated_as!
narrow histone mark
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
133 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
cell line
smooth muscle cell of the coronary artery
52
8
6
tissue
coronary artery
1
36
3
2
tibial artery
1
1
19
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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