Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
61
ChIP-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
61
DNA binding
8
DNA accessibility
6
DNA methylation
3
Transcription
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
narrow histone mark
5
RNA binding protein
Date released
45
August, 2017
23
October, 2018
3
July, 2019
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
46
bam
43
fastq
28
bigWig
11
bed narrowPeak
9
bigBed narrowPeak
6
bed bed3+
5
tagAlign
4
tsv
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
80
Homo sapiens
Biosample type
79
tissue
1
in vitro differentiated cells
1
primary cell
Organ
542
liver
476
pancreas
344
epithelium
281
heart
279
kidney
177
connective tissue
152
brain
149
vasculature
144
blood vessel
100
limb
97
bone element
81
adipose tissue
79
artery
77
musculature of body
68
blood
68
bodily fluid
39
eye
30
nerve
23
spleen
18
ureter
16
vein
15
embryo
12
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
81
AMP
Genome assembly (visualization)
28
hg19
27
GRCh38
Lab
81
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
target.investigated_as!
narrow histone mark
assay_title!
total RNA-seq
award.project!
LungMap
BIOSAMPLE
ASSAY
81 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
subcutaneous abdominal adipose tissue
25
3
omental fat pad
11
1
1
2
subcutaneous adipose tissue
12
1
1
1
white adipose tissue
12
adipose tissue
1
3
3
1
+ See 1 more…
in vitro differentiated cells
white fat cell
1
primary cell
mesenchymal stem cell of adipose
1
See all biosamples
Download