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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
ChIP-seq
10
total RNA-seq
5
STARR-seq
3
Hi-C
1
whole genome sequencing assay
Assay category
16
DNA binding
10
Transcription
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
34
August, 2021
1
March, 2019
Available data
12
bed narrowPeak
12
bigWig
10
tsv
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
35
Homo sapiens
Biosample type
32
cell line
3
tissue
Organ
29
liver
3
pancreas
2
kidney
Project
35
AMP
Genome assembly (visualization)
15
hg19
GRCh38
Lab
1012
AMP-T2D consortium
314
Klaus Kaestner, Upenn
143
Kyle Gaulton, UCSD
67
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
35
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
1
inconsistent ontology term
target.investigated_as!
narrow histone mark
assembly!
GRCh38
BIOSAMPLE
ASSAY
35 results
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ChIP-seq
total RNA-seq
STARR-seq
Hi-C
whole genome sequencing assay
cell line
HepG2
16
9
2
1
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
1
2
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