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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
35
ATAC-seq
20
ChIP-seq
8
WGBS
3
DNase-seq
3
pCHi-C
3
total RNA-seq
Assay category
96
Transcription
38
DNA accessibility
20
DNA binding
8
DNA methylation
Target of assay
20
control
Date released
92
August, 2021
36
February, 2023
10
April, 2019
8
July, 2019
6
May, 2019
5
June, 2019
3
February, 2020
3
March, 2020
2
February, 2021
Available data
98
tsv
38
bed narrowPeak
29
bam
9
bigWig
6
bed bedMethyl
6
bigBed bedMethyl
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
3
bigBed narrowPeak
2
tagAlign
Organism
165
Homo sapiens
Biosample type
160
tissue
3
primary cell
2
cell line
Organ
284
pancreas
225
kidney
212
epithelium
165
heart
158
liver
97
brain
89
bone element
80
connective tissue
70
blood vessel
70
vasculature
55
adipose tissue
48
artery
25
eye
25
limb
21
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
7
embryo
4
skeleton
4
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
165
AMP
Genome assembly (visualization)
202
GRCh38
hg19
Lab
165
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
narrow histone mark
assembly!
hg19
BIOSAMPLE
ASSAY
165 results
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single cell RNA-seq
ATAC-seq
ChIP-seq
WGBS
DNase-seq
pCHi-C
total RNA-seq
tissue
coronary artery
35
2
1
heart left ventricle
18
6
4
1
heart right ventricle
17
2
2
1
right cardiac atrium
18
1
1
1
left cardiac atrium
18
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primary cell
cardiac fibroblast
2
1
cell line
smooth muscle cell of the coronary artery
2
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