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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
79
ChIP-seq
42
ATAC-seq
4
GRO-seq
4
Hi-C
2
Capture-C
2
pCHi-C
1
DNase-seq
Assay category
127
Transcription
79
DNA binding
43
DNA accessibility
4
3D chromatin structure
Target of assay
77
histone
77
histone modification
narrow histone mark
37
transcription factor
36
broad histone mark
6
RNA binding protein
5
control
3
chromatin remodeller
Date released
88
May, 2021
37
August, 2017
26
August, 2021
26
December, 2017
26
February, 2021
23
February, 2018
12
February, 2023
8
October, 2019
6
March, 2020
5
November, 2019
4
January, 2018
Available data
224
bam
218
bigWig
127
tsv
91
bed narrowPeak
90
fastq
21
bed bed3+
12
bigBed narrowPeak
9
tagAlign
7
bed bedgraph
6
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
261
Homo sapiens
Biosample type
1516
tissue
516
primary cell
511
cell line
261
in vitro differentiated cells
3
stem cell
Organ
61
connective tissue
15
embryo
12
epithelium
9
liver
1
heart
1
pancreas
Project
261
AMP
Genome assembly (visualization)
257
hg19
225
GRCh38
4
hg18
Lab
249
AMP-T2D consortium
7
Struan F.A. Grant, CHOP
5
Kyle Gaulton, UCSD
Audit category:
106
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
15
inconsistent control read length
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
261 results
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total RNA-seq
ChIP-seq
ATAC-seq
GRO-seq
Hi-C
Capture-C
pCHi-C
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
4
36
8
1
1
neural progenitor cell
7
5
10
cardiac precursors (cardiac muscle cell)
19
1
1
pancreatic endoderm
4
8
1
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