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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
152
total RNA-seq
135
ChIP-seq
100
single cell RNA-seq
84
ATAC-seq
22
DNase-seq
10
RRBS
9
Hi-C
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
254
Transcription
135
DNA binding
107
DNA accessibility
10
DNA methylation
9
3D chromatin structure
Target of assay
230
histone
230
histone modification
118
broad histone mark
narrow histone mark
10
RNA binding protein
10
control
10
transcription factor
1
chromatin remodeller
Date released
134
May, 2021
90
May, 2020
57
September, 2018
48
July, 2018
43
April, 2018
31
July, 2019
29
June, 2019
25
August, 2017
18
October, 2019
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
February, 2021
3
June, 2018
3
May, 2019
3
October, 2022
2
October, 2018
1
August, 2021
1
March, 2020
Available data
484
bigWig
472
bam
252
tsv
186
fastq
184
bed narrowPeak
76
bigBed narrowPeak
52
tagAlign
34
bed broadPeak
34
bigBed broadPeak
28
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
516
Homo sapiens
Biosample type
1516
tissue
516
primary cell
511
cell line
257
in vitro differentiated cells
2
stem cell
Organ
193
epithelium
154
pancreas
30
connective tissue
24
vasculature
20
kidney
19
blood vessel
18
brain
12
vein
11
liver
8
heart
8
musculature of body
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
373
AMP
140
T1D
3
HPAP
Genome assembly (visualization)
516
hg19
434
GRCh38
Lab
348
AMP-T2D consortium
165
Kyle Gaulton, UCSD
3
Klaus Kaestner, Upenn
Audit category:
33
inconsistent ontology term
4
audit script error
Audit category:
21
missing controlled_by
Audit category:
1
inconsistent assembly
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
516 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
RRBS
Hi-C
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
monocyte
53
44
15
pancreatic beta cell
10
3
12
7
1
pancreatic alpha cell
10
3
12
6
1
CD8-positive, alpha-beta T cell
4
23
2
pancreatic acinar cell
4
4
12
5
1
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