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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
152
total RNA-seq
135
ChIP-seq
84
ATAC-seq
57
single cell RNA-seq
22
DNase-seq
10
RRBS
9
Hi-C
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
211
Transcription
135
DNA binding
107
DNA accessibility
10
DNA methylation
9
3D chromatin structure
Target of assay
230
histone
230
histone modification
118
broad histone mark
narrow histone mark
10
RNA binding protein
10
control
10
transcription factor
1
chromatin remodeller
Date released
134
May, 2021
90
May, 2020
57
September, 2018
48
July, 2018
April, 2018
31
July, 2019
29
June, 2019
25
August, 2017
18
October, 2019
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
February, 2021
3
June, 2018
3
May, 2019
3
October, 2022
2
October, 2018
1
August, 2021
1
March, 2020
Available data
441
bigWig
429
bam
209
tsv
184
bed narrowPeak
148
fastq
76
bigBed narrowPeak
52
tagAlign
34
bed broadPeak
34
bigBed broadPeak
28
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
473
Homo sapiens
Biosample type
1510
tissue
511
cell line
473
primary cell
257
in vitro differentiated cells
2
stem cell
Organ
160
epithelium
121
pancreas
28
connective tissue
24
vasculature
20
kidney
19
blood vessel
18
brain
12
vein
11
liver
8
heart
8
musculature of body
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
330
AMP
140
T1D
3
HPAP
Genome assembly (visualization)
473
hg19
391
GRCh38
Lab
305
AMP-T2D consortium
165
Kyle Gaulton, UCSD
3
Klaus Kaestner, Upenn
Audit category:
33
inconsistent ontology term
4
audit script error
Audit category:
21
missing controlled_by
Audit category:
1
inconsistent assembly
target.investigated_as!
narrow histone mark
month_released!
April, 2018
BIOSAMPLE
ASSAY
473 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RRBS
Hi-C
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
monocyte
53
44
15
pancreatic beta cell
10
3
7
9
1
CD8-positive, alpha-beta T cell
4
23
2
pancreatic alpha cell
10
3
6
9
1
pancreatic acinar cell
4
4
5
6
1
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