Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
single cell RNA-seq
98
total RNA-seq
71
ATAC-seq
68
ChIP-seq
22
DNase-seq
10
RRBS
9
Hi-C
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
200
Transcription
94
DNA accessibility
68
DNA binding
10
DNA methylation
9
3D chromatin structure
Target of assay
116
histone
116
histone modification
narrow histone mark
54
broad histone mark
10
RNA binding protein
10
transcription factor
7
control
1
chromatin remodeller
Date released
May, 2021
90
May, 2020
57
September, 2018
48
July, 2018
43
April, 2018
31
July, 2019
29
June, 2019
25
August, 2017
18
October, 2019
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
February, 2021
3
June, 2018
3
May, 2019
3
October, 2022
2
October, 2018
1
August, 2021
1
March, 2020
Available data
363
bam
363
bigWig
200
tsv
186
fastq
107
bed narrowPeak
76
bigBed narrowPeak
34
bed broadPeak
34
bigBed broadPeak
26
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
8
tagAlign
5
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
382
Homo sapiens
Biosample type
1478
tissue
507
cell line
382
primary cell
169
in vitro differentiated cells
2
stem cell
Organ
193
epithelium
154
pancreas
30
connective tissue
24
vasculature
20
kidney
19
blood vessel
18
brain
12
vein
11
liver
8
heart
8
musculature of body
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
334
AMP
45
T1D
3
HPAP
Genome assembly (visualization)
382
hg19
325
GRCh38
Lab
334
AMP-T2D consortium
45
Kyle Gaulton, UCSD
3
Klaus Kaestner, Upenn
Audit category:
33
inconsistent ontology term
4
audit script error
Audit category:
21
missing controlled_by
Audit category:
1
inconsistent assembly
target.investigated_as!
narrow histone mark
month_released!
May, 2021
BIOSAMPLE
ASSAY
382 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
RRBS
Hi-C
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
pancreatic beta cell
12
10
7
3
1
pancreatic alpha cell
12
10
6
3
1
pancreatic acinar cell
12
4
5
4
1
pancreatic ductal cell
10
4
4
6
skeletal muscle myoblast
1
9
2
1
+ See 72 more…
See all biosamples
Download