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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
142
total RNA-seq
130
ChIP-seq
96
single cell RNA-seq
82
ATAC-seq
17
DNase-seq
9
RRBS
8
Hi-C
1
FAIRE-seq
1
small RNA-seq
Assay category
239
Transcription
130
DNA binding
100
DNA accessibility
9
DNA methylation
8
3D chromatin structure
Target of assay
222
histone
222
histone modification
114
broad histone mark
narrow histone mark
10
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
134
May, 2021
90
May, 2020
57
September, 2018
46
July, 2018
41
April, 2018
25
August, 2017
23
July, 2019
20
June, 2019
18
October, 2019
6
November, 2017
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
May, 2019
3
October, 2022
2
October, 2018
1
August, 2021
1
March, 2020
Available data
457
bigWig
444
bam
237
tsv
183
fastq
172
bed narrowPeak
66
bigBed narrowPeak
52
tagAlign
29
bed broadPeak
29
bigBed broadPeak
21
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
5
hic
4
bedpe bed3+
3
cool
3
hdf5
1
tar
Organism
486
Homo sapiens
Biosample type
1036
tissue
511
cell line
486
primary cell
196
in vitro differentiated cells
2
stem cell
Organ
193
epithelium
154
pancreas
connective tissue
24
vasculature
20
kidney
19
blood vessel
18
brain
12
vein
11
liver
8
heart
8
musculature of body
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
343
AMP
140
T1D
3
HPAP
Genome assembly (visualization)
486
hg19
406
GRCh38
Lab
318
AMP-T2D consortium
165
Kyle Gaulton, UCSD
3
Klaus Kaestner, Upenn
Audit category:
26
inconsistent ontology term
4
audit script error
Audit category:
21
missing controlled_by
Audit category:
1
inconsistent assembly
target.investigated_as!
narrow histone mark
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
486 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
RRBS
Hi-C
FAIRE-seq
small RNA-seq
primary cell
monocyte
53
44
15
pancreatic beta cell
10
3
12
7
1
pancreatic alpha cell
10
3
12
6
1
CD8-positive, alpha-beta T cell
4
23
2
pancreatic acinar cell
4
4
12
5
1
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