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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
ChIP-seq
5
DNase-seq
4
Hi-C
2
total RNA-seq
1
FAIRE-seq
1
RRBS
Assay category
11
DNA binding
6
DNA accessibility
4
3D chromatin structure
2
Transcription
1
DNA methylation
Target of assay
14
histone
14
histone modification
7
broad histone mark
narrow histone mark
2
RNA binding protein
2
control
2
transcription factor
Date released
11
October, 2019
5
July, 2019
4
November, 2017
3
June, 2019
1
March, 2020
Available data
21
bigWig
19
bam
13
bed narrowPeak
13
bigBed narrowPeak
9
bed broadPeak
9
bigBed broadPeak
7
bed bed3+
4
fastq
2
hdf5
2
hic
2
tsv
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
24
Homo sapiens
Biosample type
64
cell line
52
tissue
24
primary cell
Organ
193
epithelium
154
pancreas
30
connective tissue
24
vasculature
20
kidney
19
blood vessel
18
brain
12
vein
11
liver
8
heart
8
musculature of body
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
24
AMP
Genome assembly (visualization)
24
hg19
15
GRCh38
Lab
24
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
24 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
FAIRE-seq
RRBS
primary cell
endothelial cell of umbilical vein
7
2
2
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
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