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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
902
total RNA-seq
290
ChIP-seq
161
DNase-seq
122
ATAC-seq
16
small RNA-seq
11
Hi-C
9
RRBS
4
FAIRE-seq
1
snATAC-seq
Assay category
918
Transcription
290
DNA binding
288
DNA accessibility
11
3D chromatin structure
9
DNA methylation
Target of assay
438
histone modification
437
histone
narrow histone mark
198
broad histone mark
88
transcription factor
22
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
154
August, 2017
147
June, 2019
143
May, 2020
116
July, 2018
60
July, 2019
60
May, 2019
55
October, 2019
42
April, 2019
40
November, 2019
39
May, 2022
38
May, 2021
34
December, 2017
34
October, 2018
33
February, 2023
17
November, 2018
16
March, 2020
12
October, 2017
6
April, 2018
4
January, 2019
3
December, 2018
3
March, 2019
2
January, 2018
2
November, 2017
2
September, 2017
1
August, 2021
1
May, 2023
Available data
1421
bam
1410
bigWig
918
tsv
542
bed narrowPeak
401
bigBed narrowPeak
266
fastq
183
bed bed3+
181
bed broadPeak
160
bigBed broadPeak
23
tagAlign
11
hic
9
bed bedMethyl
9
bedpe bed3+
9
bigBed bedMethyl
5
bed bed3
1
bedpe
1
txt
Organism
1512
Homo sapiens
Biosample type
1516
tissue
516
primary cell
511
cell line
257
in vitro differentiated cells
2
stem cell
Organ
480
connective tissue
422
adipose tissue
385
pancreas
232
liver
90
heart
82
kidney
82
limb
70
bone element
54
brain
54
musculature of body
52
blood vessel
52
vasculature
30
eye
23
nerve
21
artery
18
ureter
12
epithelium
12
skeleton
12
spleen
1
pericardium
Project
1516
AMP
Genome assembly (visualization)
1583
GRCh38
1516
hg19
Lab
1473
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
2
inconsistent ontology term
1
audit script error
Audit category:
21
missing controlled_by
Audit category:
3
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
1516 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
Hi-C
RRBS
FAIRE-seq
snATAC-seq
tissue
adipose tissue
382
3
islet of Langerhans
266
19
1
42
2
1
1
liver
147
49
2
20
1
1
1
bone tissue
58
body of pancreas
2
20
2
4
2
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