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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
total RNA-seq
67
ChIP-seq
23
ATAC-seq
Assay category
98
Transcription
67
DNA binding
23
DNA accessibility
Target of assay
114
histone
114
histone modification
64
broad histone mark
narrow histone mark
3
control
Date released
125
May, 2021
45
May, 2020
18
May, 2022
Available data
170
bigWig
158
bam
96
tsv
82
bed narrowPeak
44
tagAlign
18
fastq
2
bed bed3+
Organism
188
Homo sapiens
Biosample type
165
primary cell
18
tissue
5
in vitro differentiated cells
Organ
18
pancreas
Project
140
T1D
48
AMP
Genome assembly (visualization)
188
hg19
140
GRCh38
Lab
2566
AMP-T2D consortium
188
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
15
Bing Ren, UCSD
7
Struan F.A. Grant, CHOP
3
Klaus Kaestner, Upenn
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
188 results
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total RNA-seq
ChIP-seq
ATAC-seq
primary cell
monocyte
53
44
CD8-positive, alpha-beta T cell
4
23
B cell
2
T follicular helper cell
2
T-helper 1 cell
2
+ See 20 more…
tissue
islet of Langerhans
18
in vitro differentiated cells
embryonic stem cell
5
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