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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
16
ChIP-seq
4
total RNA-seq
3
RRBS
2
Hi-C
2
small RNA-seq
1
ATAC-seq
1
snATAC-seq
Assay category
35
DNA accessibility
16
DNA binding
6
Transcription
3
DNA methylation
2
3D chromatin structure
Target of assay
27
histone
27
histone modification
16
broad histone mark
narrow histone mark
Date released
37
June, 2019
10
August, 2017
5
July, 2019
4
March, 2020
4
May, 2019
1
January, 2018
1
May, 2022
Available data
56
bigWig
49
bed narrowPeak
47
bam
41
bed broadPeak
41
bigBed narrowPeak
34
bed bed3+
33
bigBed broadPeak
8
tagAlign
6
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
62
Homo sapiens
Biosample type
54
tissue
8
primary cell
Organ
589
pancreas
573
liver
571
connective tissue
424
adipose tissue
263
epithelium
163
heart
140
vasculature
135
blood vessel
114
kidney
87
artery
82
limb
72
brain
70
bone element
62
musculature of body
54
blood
54
bodily fluid
33
eye
23
nerve
22
embryo
18
ureter
12
skeleton
12
spleen
12
vein
2
pericardium
Project
62
AMP
Genome assembly (visualization)
62
hg19
48
GRCh38
Lab
62
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
1
audit script error
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
62 results
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DNase-seq
ChIP-seq
total RNA-seq
RRBS
Hi-C
small RNA-seq
ATAC-seq
snATAC-seq
tissue
muscle of arm
17
muscle of leg
13
4
skeletal muscle tissue
8
1
2
1
1
1
psoas muscle
2
2
forelimb muscle
1
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primary cell
skeletal muscle satellite cell
4
1
1
skeletal muscle cell
1
1
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