Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
16
ChIP-seq
3
RRBS
2
Hi-C
1
ATAC-seq
1
snATAC-seq
Assay category
35
DNA accessibility
16
DNA binding
3
DNA methylation
2
3D chromatin structure
Target of assay
27
histone
27
histone modification
16
broad histone mark
narrow histone mark
Date released
37
June, 2019
10
August, 2017
4
May, 2019
2
March, 2020
1
January, 2018
1
July, 2019
1
May, 2022
Available data
56
bigWig
49
bed narrowPeak
47
bam
41
bed broadPeak
41
bigBed narrowPeak
34
bed bed3+
33
bigBed broadPeak
8
tagAlign
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
56
Homo sapiens
Biosample type
50
tissue
6
primary cell
Organ
411
liver
181
pancreas
116
epithelium
102
kidney
97
connective tissue
93
heart
82
vasculature
78
limb
77
blood vessel
60
brain
56
musculature of body
54
blood
54
bodily fluid
33
artery
33
eye
26
adipose tissue
19
nerve
18
ureter
12
bone element
12
skeleton
12
spleen
12
vein
8
embryo
1
pericardium
Project
56
AMP
Genome assembly (visualization)
56
hg19
42
GRCh38
Lab
56
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
1
audit script error
target.investigated_as!
narrow histone mark
files.file_type!
tsv
BIOSAMPLE
ASSAY
56 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
RRBS
Hi-C
ATAC-seq
snATAC-seq
tissue
muscle of arm
17
muscle of leg
13
4
skeletal muscle tissue
8
2
1
1
psoas muscle
2
forelimb muscle
1
+ See 1 more…
primary cell
skeletal muscle satellite cell
4
skeletal muscle cell
1
1
See all biosamples
Download