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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ChIP-seq
Assay category
49
DNA binding
Target of assay
50
histone
50
histone modification
narrow histone mark
25
transcription factor
24
broad histone mark
6
chromatin remodeller
2
RNA binding protein
1
recombinant protein
Date released
17
August, 2017
17
September, 2018
9
November, 2017
3
November, 2018
3
October, 2017
Available data
60
fastq
59
bam
58
bigWig
30
bed narrowPeak
13
bigBed narrowPeak
bed bed3+
3
tagAlign
1
bed broadPeak
Organism
49
Homo sapiens
Biosample type
21
primary cell
12
cell line
11
tissue
5
in vitro differentiated cells
Organ
21
pancreas
13
connective tissue
12
liver
10
epithelium
8
adipose tissue
3
brain
Project
49
AMP
Genome assembly (visualization)
47
hg19
40
GRCh38
Lab
49
AMP-T2D consortium
Audit category:
49
missing controlled_by
Audit category:
6
inconsistent control run_type
5
inconsistent control read length
target.investigated_as!
narrow histone mark
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
49 results
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Clear Filters
ChIP-seq
primary cell
pancreatic endocrine cell
11
pancreatic ductal cell
6
pancreatic acinar cell
4
cell line
HepG2
12
tissue
white adipose tissue
8
brain
3
in vitro differentiated cells
adipocyte
5
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