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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
Assay category
33
DNA binding
Target of assay
30
histone
30
histone modification
18
transcription factor
15
broad histone mark
narrow histone mark
6
chromatin remodeller
3
RNA binding protein
1
recombinant protein
Date released
13
November, 2017
9
August, 2017
9
December, 2017
1
February, 2018
1
November, 2018
Available data
33
bam
33
bigWig
33
fastq
32
bed narrowPeak
16
bigBed narrowPeak
9
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
6
tagAlign
Organism
33
Homo sapiens
Biosample type
15
in vitro differentiated cells
14
cell line
3
tissue
1
stem cell
Organ
14
liver
6
connective tissue
3
pancreas
2
embryo
Project
33
AMP
Genome assembly (visualization)
33
hg19
31
GRCh38
Lab
33
AMP-T2D consortium
Audit category:
40
inconsistent control read length
inconsistent control run_type
2
inconsistent assembly
target.investigated_as!
narrow histone mark
audit.WARNING.category!
inconsistent control run_type
BIOSAMPLE
ASSAY
33 results
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ChIP-seq
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
3
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
cell line
HepG2
14
tissue
pancreas
3
stem cell
hESC
1
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