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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
ChIP-seq
Assay category
41
DNA binding
Target of assay
31
histone
31
histone modification
26
transcription factor
narrow histone mark
15
broad histone mark
14
chromatin remodeller
6
RNA binding protein
1
recombinant protein
Date released
17
November, 2017
9
August, 2017
9
December, 2017
5
November, 2018
1
February, 2018
Available data
41
bam
41
bigWig
41
fastq
40
bed narrowPeak
24
bigBed narrowPeak
9
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
6
tagAlign
Organism
41
Homo sapiens
Biosample type
22
cell line
15
in vitro differentiated cells
3
tissue
1
stem cell
Organ
22
liver
6
connective tissue
3
pancreas
2
embryo
Project
41
AMP
Genome assembly (visualization)
41
hg19
37
GRCh38
Lab
41
AMP-T2D consortium
Audit category:
6
missing controlled_by
Audit category:
40
inconsistent control read length
8
inconsistent control run_type
3
inconsistent assembly
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
41 results
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ChIP-seq
cell line
HepG2
22
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
3
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
tissue
pancreas
3
stem cell
hESC
1
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