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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
total RNA-seq
44
ChIP-seq
16
pCHi-C
8
snATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
98
Transcription
44
DNA binding
8
DNA accessibility
Target of assay
86
histone
86
histone modification
44
broad histone mark
narrow histone mark
Date released
111
May, 2021
45
May, 2020
8
January, 2021
5
February, 2023
2
March, 2020
Available data
142
bam
142
bigWig
98
tsv
44
bed narrowPeak
44
tagAlign
Organism
171
Homo sapiens
Biosample type
164
primary cell
tissue
7
cell line
Organ
8
blood
8
bodily fluid
2
epithelium
2
pancreas
1
bone element
1
bone marrow
1
connective tissue
Project
1464
AMP
324
HPAP
171
T1D
4
community
1
ITG
Genome assembly (visualization)
142
GRCh38
142
hg19
Lab
169
Kyle Gaulton, UCSD
2
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
target.investigated_as!
narrow histone mark
biosample_type!
tissue
BIOSAMPLE
ASSAY
171 results
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total RNA-seq
ChIP-seq
pCHi-C
snATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
44
1
peripheral blood mononuclear cell
8
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
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cell line
EndoC_BH1
2
3
2
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