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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
ATAC-seq
10
snATAC-seq
9
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
pCHi-C
Assay category
21
DNA accessibility
9
Transcription
Target of assay
4
histone
4
histone modification
narrow histone mark
Date released
23
February, 2023
8
January, 2021
4
March, 2020
1
May, 2021
Available data
2
bam
2
bigWig
2
tsv
Organism
36
Homo sapiens
Biosample type
primary cell
29
tissue
7
cell line
Organ
30
pancreas
2
epithelium
1
thymus
Project
3157
AMP
47
KPMP
36
T1D
19
LungMap
4
community
Genome assembly (visualization)
2
GRCh38
2
hg19
Lab
32
Kyle Gaulton, UCSD
4
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
target.investigated_as!
narrow histone mark
biosample_type!
primary cell
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
36 results
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ATAC-seq
snATAC-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
pCHi-C
tissue
islet of Langerhans
11
6
7
pancreas
4
thymus
1
cell line
EndoC_BH1
2
3
2
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