Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
DNase-seq
39
ChIP-seq
4
ATAC-seq
2
Capture-C
1
Hi-C
1
pCHi-C
1
snATAC-seq
Assay category
39
DNA binding
5
DNA accessibility
1
3D chromatin structure
Target of assay
22
histone
22
histone modification
19
transcription factor
11
broad histone mark
narrow histone mark
9
control
2
RNA binding protein
Date released
27
August, 2017
10
December, 2017
4
February, 2023
2
August, 2021
2
September, 2017
1
February, 2021
1
May, 2022
1
October, 2019
Available data
2301
bam
2048
bigWig
1330
tsv
1017
bed narrowPeak
868
fastq
630
bigBed narrowPeak
171
tagAlign
161
txt
74
bed broadPeak
64
xls
52
bigBed broadPeak
48
bed bed3+
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
vcf
Organism
48
Homo sapiens
Biosample type
23
tissue
21
in vitro differentiated cells
primary cell
2
cell line
2
stem cell
Organ
17
connective tissue
16
pancreas
4
adipose tissue
4
liver
2
embryo
1
musculature of body
Project
48
AMP
Genome assembly (visualization)
48
hg19
40
GRCh38
Lab
46
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
1
audit script error
Audit category:
11
missing controlled_by
Audit category:
9
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
narrow histone mark
biosample_type!
primary cell
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
48 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
Capture-C
Hi-C
pCHi-C
snATAC-seq
tissue
islet of Langerhans
15
white adipose tissue
4
liver
3
skeletal muscle tissue
1
in vitro differentiated cells
adipocyte
7
1
1
Posterior foregut
2
definitive endodermal cell
2
immature adipocyte
2
pancreatic endoderm
2
+ See 3 more…
cell line
HepG2
1
Panc1
1
stem cell
hESC
2
See all biosamples
Download