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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
2
WGBS
1
ATAC-seq
DNase-seq
1
pCHi-C
Assay category
18
DNA binding
2
DNA methylation
1
DNA accessibility
Target of assay
8
control
6
histone
6
histone modification
6
transcription factor
4
broad histone mark
3
other context
3
other post-translational modification
narrow histone mark
Date released
8
November, 2018
7
December, 2018
5
January, 2019
1
March, 2020
1
October, 2017
Available data
21
bam
21
fastq
13
bigWig
11
bed narrowPeak
10
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
tsv
Organism
22
Homo sapiens
Biosample type
22
tissue
Organ
715
liver
613
connective tissue
550
pancreas
475
adipose tissue
315
heart
239
kidney
176
blood vessel
176
vasculature
158
bone element
129
artery
124
brain
103
epithelium
71
limb
60
blood
60
bodily fluid
51
eye
41
musculature of body
33
nerve
29
embryo
22
spleen
20
lung
16
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
22
AMP
Genome assembly (visualization)
13
GRCh38
11
hg19
Lab
22
AMP-T2D consortium
target.investigated_as!
narrow histone mark
biosample_type!
primary cell
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
22 results
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ChIP-seq
WGBS
ATAC-seq
pCHi-C
tissue
spleen
18
2
1
1
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