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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ChIP-seq
59
total RNA-seq
46
ATAC-seq
6
single cell RNA-seq
DNase-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
65
Transcription
61
DNA binding
46
DNA accessibility
2
DNA methylation
1
3D chromatin structure
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
control
narrow histone mark
7
transcription factor
3
RNA binding protein
Date released
66
February, 2021
36
May, 2019
35
February, 2023
20
October, 2019
7
July, 2019
6
August, 2021
3
February, 2020
3
March, 2020
Available data
130
bam
103
bigWig
89
bed narrowPeak
66
tsv
39
bigBed narrowPeak
6
tagAlign
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
176
Homo sapiens
Biosample type
110
tissue
66
cell line
primary cell
Organ
715
liver
613
connective tissue
550
pancreas
475
adipose tissue
315
heart
239
kidney
176
blood vessel
176
vasculature
158
bone element
129
artery
124
brain
103
epithelium
71
limb
60
blood
60
bodily fluid
51
eye
41
musculature of body
33
nerve
29
embryo
22
spleen
20
lung
16
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
176
AMP
Genome assembly (visualization)
146
GRCh38
111
hg19
Lab
176
AMP-T2D consortium
target.investigated_as!
narrow histone mark
biosample_type!
primary cell
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
176 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
Hi-C
pCHi-C
tissue
coronary artery
3
1
36
tibial artery
19
1
1
aorta
9
1
4
2
1
1
thoracic aorta
12
2
1
ascending aorta
12
2
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cell line
smooth muscle cell of the coronary artery
6
52
8
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