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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
583
ChIP-seq
260
ATAC-seq
178
DNase-seq
169
single cell RNA-seq
85
RNA microarray
27
WGBS
26
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1222
Transcription
583
DNA binding
468
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
540
February, 2021
234
August, 2017
229
August, 2021
166
May, 2020
163
June, 2019
120
July, 2018
113
October, 2019
95
February, 2023
82
May, 2019
77
July, 2019
65
May, 2022
63
October, 2018
57
April, 2019
54
November, 2017
47
September, 2023
46
December, 2017
40
May, 2021
40
November, 2019
38
March, 2020
26
November, 2018
25
February, 2020
25
May, 2024
21
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
January, 2019
5
March, 2019
4
November, 2020
2
January, 2018
1
December, 2019
Available data
1664
bam
1504
bigWig
1069
tsv
718
bed narrowPeak
453
bigBed narrowPeak
349
fastq
198
bed bed3+
198
bed broadPeak
176
bigBed broadPeak
151
txt
128
tagAlign
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
csv
Organism
2437
Homo sapiens
Biosample type
2444
tissue
primary cell
643
cell line
337
in vitro differentiated cells
9
stem cell
Organ
534
connective tissue
476
adipose tissue
472
pancreas
317
liver
282
kidney
275
heart
158
bone element
151
brain
115
blood vessel
115
vasculature
107
limb
72
musculature of body
67
artery
54
eye
35
nerve
23
spleen
20
lung
18
ureter
16
skeleton
14
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2349
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1608
GRCh38
1515
hg19
Lab
2107
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
25
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
audit script error
Audit category:
22
missing controlled_by
Audit category:
3
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
narrow histone mark
biosample_type!
primary cell
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
2444 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
298
34
68
1
6
4
3
1
1
4
adipose tissue
382
1
3
3
1
liver
167
103
20
2
1
3
1
1
1
1
kidney
49
17
75
13
59
6
1
1
1
bone element
84
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