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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
45
ATAC-seq
28
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
56
Transcription
49
DNA accessibility
28
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
22
October, 2019
3
May, 2019
2
August, 2021
2
February, 2020
2
June, 2019
1
July, 2019
Available data
94
bam
77
bigWig
68
bed narrowPeak
56
tsv
19
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
133
Homo sapiens
Biosample type
67
tissue
66
cell line
primary cell
Organ
717
liver
614
connective tissue
552
pancreas
475
adipose tissue
335
heart
307
kidney
180
blood vessel
180
vasculature
158
bone element
150
brain
133
artery
106
limb
104
epithelium
70
musculature of body
60
blood
60
bodily fluid
54
eye
35
nerve
29
embryo
21
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
133
AMP
Genome assembly (visualization)
120
GRCh38
85
hg19
Lab
133
AMP-T2D consortium
target.investigated_as!
narrow histone mark
biosample_type!
primary cell
files.file_type!
bigBed bedMethyl
BIOSAMPLE
ASSAY
133 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
tissue
coronary artery
1
36
3
2
tibial artery
1
1
19
2
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
52
8
6
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