Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
20
ChIP-seq
6
Hi-C
5
total RNA-seq
2
RRBS
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
small RNA-seq
1
snATAC-seq
Assay category
34
DNA accessibility
20
DNA binding
7
Transcription
6
3D chromatin structure
2
DNA methylation
Target of assay
25
histone
25
histone modification
16
broad histone mark
narrow histone mark
4
control
Date released
32
June, 2019
17
August, 2017
6
July, 2019
5
March, 2020
5
May, 2019
2
February, 2020
2
May, 2022
1
January, 2018
Available data
50
bigWig
44
bed narrowPeak
42
bam
40
bed broadPeak
36
bigBed narrowPeak
33
bed bed3+
32
bigBed broadPeak
10
tagAlign
7
tsv
3
bed bedMethyl
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
70
Homo sapiens
Biosample type
70
tissue
primary cell
Organ
717
liver
614
connective tissue
552
pancreas
475
adipose tissue
335
heart
307
kidney
180
blood vessel
180
vasculature
158
bone element
150
brain
133
artery
106
limb
104
epithelium
70
musculature of body
60
blood
60
bodily fluid
54
eye
35
nerve
29
embryo
21
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
70
AMP
Genome assembly (visualization)
52
hg19
40
GRCh38
Lab
70
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
target.investigated_as!
narrow histone mark
biosample_type!
primary cell
files.file_type!
bigBed bedMethyl
BIOSAMPLE
ASSAY
70 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
Hi-C
total RNA-seq
RRBS
ATAC-seq
pCHi-C
single cell RNA-seq
small RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
15
1
2
1
1
1
1
muscle of leg
13
5
muscle of arm
17
gastrocnemius medialis
4
1
psoas muscle
2
2
1
+ See 3 more…
See all biosamples
Download