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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
177
ChIP-seq
89
total RNA-seq
9
WGBS
5
RRBS
3
DNase-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
177
DNA binding
89
Transcription
14
DNA methylation
6
DNA accessibility
Target of assay
161
histone modification
160
histone
93
broad histone mark
narrow histone mark
45
transcription factor
37
control
6
RNA binding protein
2
chromatin remodeller
Date released
667
February, 2021
362
November, 2017
306
August, 2021
286
August, 2017
181
May, 2021
167
May, 2020
163
June, 2019
147
October, 2019
120
July, 2018
117
February, 2023
87
November, 2018
82
May, 2019
78
December, 2017
77
July, 2019
66
May, 2022
63
October, 2018
60
March, 2020
57
April, 2019
57
November, 2019
47
September, 2023
35
December, 2018
31
February, 2018
27
January, 2019
25
February, 2020
25
May, 2024
21
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
199
fastq
194
bam
188
bigWig
89
tsv
73
bed narrowPeak
49
tagAlign
27
bed bed3+
17
bed broadPeak
17
bigBed narrowPeak
5
bed bedMethyl
5
bigBed bedMethyl
1
bigBed broadPeak
Organism
281
Homo sapiens
Biosample type
234
tissue
52
in vitro differentiated cells
primary cell
Organ
129
pancreas
97
connective tissue
45
adipose tissue
41
liver
19
musculature of body
Project
286
AMP
Genome assembly (visualization)
191
hg19
177
GRCh38
Lab
286
AMP-T2D consortium
Audit category:
24
missing controlled_by
Audit category:
9
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
narrow histone mark
biosample_type!
primary cell
files.file_type!
hdf5
BIOSAMPLE
ASSAY
286 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
DNase-seq
ATAC-seq
FAIRE-seq
tissue
islet of Langerhans
28
89
1
1
liver
35
3
1
subcutaneous abdominal adipose tissue
25
3
skeletal muscle tissue
15
4
white adipose tissue
12
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in vitro differentiated cells
adipocyte
51
1
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