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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
501
ChIP-seq
20
total RNA-seq
5
GRO-seq
1
DNase-seq
1
Hi-C
1
WGBS
1
pCHi-C
Assay category
501
DNA binding
20
Transcription
1
3D chromatin structure
1
DNA accessibility
1
DNA methylation
Target of assay
370
transcription factor
85
control
83
histone
83
histone modification
82
recombinant protein
69
RNA binding protein
narrow histone mark
40
broad histone mark
33
chromatin remodeller
2
other context
2
other post-translational modification
Date released
308
November, 2017
61
November, 2018
42
August, 2017
32
December, 2017
31
February, 2018
28
December, 2018
22
January, 2019
5
January, 2018
1
August, 2018
Available data
817
bam
724
bigWig
530
fastq
479
bed narrowPeak
357
bigBed narrowPeak
254
tsv
54
bed broadPeak
54
bigBed broadPeak
43
tagAlign
26
bed bed3+
9
bedpe bed3+
7
bed bedgraph
6
bed bed3
6
hic
4
txt
3
tar
2
ibed
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
vcf
Organism
530
Homo sapiens
Biosample type
419
cell line
primary cell
tissue
108
in vitro differentiated cells
3
stem cell
Organ
370
liver
59
blood
59
bodily fluid
43
connective tissue
19
embryo
12
epithelium
1
adipose tissue
Project
530
AMP
Genome assembly (visualization)
447
hg19
402
GRCh38
5
hg18
Lab
530
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
inconsistent control
Audit category:
17
missing controlled_by
Audit category:
37
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
narrow histone mark
biosample_type!
primary cell
tissue
BIOSAMPLE
ASSAY
530 results
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ChIP-seq
total RNA-seq
GRO-seq
DNase-seq
Hi-C
WGBS
pCHi-C
cell line
HepG2
353
5
1
1
GM12878
59
in vitro differentiated cells
adipocyte
41
1
pancreatic endoderm
12
4
1
hepatocyte
10
definitive endodermal cell
6
2
1
primitive gut cell
6
2
1
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stem cell
hESC
2
1
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