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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
707
ChIP-seq
179
DNase-seq
123
total RNA-seq
29
ATAC-seq
11
WGBS
5
GRO-seq
3
RRBS
2
FAIRE-seq
1
Hi-C
1
pCHi-C
Assay category
707
DNA binding
210
DNA accessibility
123
Transcription
14
DNA methylation
1
3D chromatin structure
Target of assay
449
transcription factor
183
histone modification
182
histone
152
control
99
broad histone mark
84
RNA binding protein
narrow histone mark
82
recombinant protein
35
chromatin remodeller
5
other context
5
other post-translational modification
Date released
310
November, 2017
211
August, 2017
163
June, 2019
87
November, 2018
78
December, 2017
53
October, 2018
35
December, 2018
31
February, 2018
27
January, 2019
24
May, 2022
16
October, 2017
6
April, 2018
6
September, 2017
5
January, 2018
5
October, 2019
2
July, 2018
1
August, 2018
1
March, 2019
Available data
2481
bam
2228
bigWig
1330
tsv
1197
bed narrowPeak
879
fastq
810
bigBed narrowPeak
252
bed broadPeak
230
bigBed broadPeak
225
bed bed3+
171
tagAlign
161
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
vcf
Organism
1056
Homo sapiens
Biosample type
530
tissue
420
cell line
primary cell
108
in vitro differentiated cells
3
stem cell
Organ
446
liver
205
pancreas
86
connective tissue
68
kidney
59
blood
59
bodily fluid
44
adipose tissue
42
musculature of body
38
brain
36
limb
27
heart
22
spleen
19
embryo
18
ureter
12
epithelium
5
blood vessel
5
vasculature
4
artery
3
eye
2
nerve
Project
1061
AMP
Genome assembly (visualization)
879
hg19
824
GRCh38
5
hg18
Lab
1035
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
28
inconsistent control
3
inconsistent ontology term
Audit category:
39
missing controlled_by
Audit category:
40
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
target.investigated_as!
narrow histone mark
biosample_type!
primary cell
BIOSAMPLE
ASSAY
1061 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
WGBS
GRO-seq
RRBS
FAIRE-seq
Hi-C
pCHi-C
tissue
islet of Langerhans
24
1
103
20
1
liver
62
2
1
1
body of pancreas
28
4
4
2
brain
8
14
spleen
18
1
1
2
+ See 46 more…
cell line
HepG2
353
5
1
1
GM12878
59
Panc1
1
in vitro differentiated cells
adipocyte
41
1
pancreatic endoderm
12
4
1
hepatocyte
10
definitive endodermal cell
6
2
1
primitive gut cell
6
2
1
+ See 7 more…
stem cell
hESC
2
1
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