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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
693
ChIP-seq
123
total RNA-seq
29
ATAC-seq
18
Hi-C
11
DNase-seq
11
WGBS
5
GRO-seq
3
RRBS
2
FAIRE-seq
1
pCHi-C
Assay category
693
DNA binding
123
Transcription
42
DNA accessibility
18
3D chromatin structure
14
DNA methylation
Target of assay
449
transcription factor
157
histone modification
156
histone
152
control
85
broad histone mark
84
RNA binding protein
82
recombinant protein
narrow histone mark
35
chromatin remodeller
5
other context
5
other post-translational modification
Date released
308
November, 2017
199
August, 2017
87
November, 2018
78
December, 2017
53
October, 2018
35
December, 2018
31
February, 2018
27
January, 2019
24
May, 2022
16
October, 2017
9
March, 2020
6
April, 2018
6
September, 2017
5
January, 2018
3
October, 2019
2
August, 2021
2
July, 2018
2
March, 2019
2
November, 2019
1
August, 2018
Available data
2481
bam
2228
bigWig
1330
tsv
1197
bed narrowPeak
879
fastq
810
bigBed narrowPeak
252
bed broadPeak
230
bigBed broadPeak
225
bed bed3+
171
tagAlign
161
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
vcf
Organism
891
Homo sapiens
Biosample type
421
cell line
primary cell
360
tissue
112
in vitro differentiated cells
3
stem cell
Organ
448
liver
200
pancreas
85
connective tissue
59
blood
59
bodily fluid
43
adipose tissue
22
spleen
19
embryo
13
epithelium
11
brain
4
musculature of body
3
heart
1
blood vessel
1
kidney
1
vasculature
Project
896
AMP
Genome assembly (visualization)
730
hg19
654
GRCh38
5
hg18
Lab
867
AMP-T2D consortium
24
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
28
inconsistent control
7
inconsistent ontology term
Audit category:
39
missing controlled_by
Audit category:
40
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
target.investigated_as!
narrow histone mark
biosample_type!
primary cell
BIOSAMPLE
ASSAY
896 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
DNase-seq
WGBS
GRO-seq
RRBS
FAIRE-seq
pCHi-C
cell line
HepG2
353
5
2
1
GM12878
59
EndoC_BH1
1
tissue
islet of Langerhans
20
103
20
2
1
1
liver
62
1
2
1
1
body of pancreas
28
4
2
2
spleen
18
1
1
2
pancreas
12
1
2
1
+ See 14 more…
in vitro differentiated cells
adipocyte
41
1
pancreatic endoderm
12
4
1
hepatocyte
10
definitive endodermal cell
6
2
1
primitive gut cell
6
2
1
+ See 10 more…
stem cell
hESC
2
1
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