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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
91
ChIP-seq
68
total RNA-seq
47
ATAC-seq
27
DNase-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
162
Transcription
91
DNA binding
74
DNA accessibility
9
DNA methylation
3
3D chromatin structure
Target of assay
95
histone
95
histone modification
57
broad histone mark
narrow histone mark
18
control
16
transcription factor
10
RNA binding protein
Date released
92
August, 2021
66
February, 2021
42
April, 2019
36
February, 2023
27
June, 2019
25
May, 2024
20
July, 2019
15
May, 2019
7
March, 2020
6
October, 2019
3
February, 2020
3
May, 2021
Available data
177
bam
176
bigWig
164
tsv
147
bed narrowPeak
68
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
342
Homo sapiens
Biosample type
275
tissue
66
cell line
primary cell
1
in vitro differentiated cells
Organ
690
liver
616
connective tissue
554
pancreas
477
adipose tissue
342
heart
306
kidney
181
blood vessel
181
vasculature
158
bone element
151
brain
133
artery
107
limb
104
epithelium
73
musculature of body
60
blood
60
bodily fluid
54
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
342
AMP
Genome assembly (visualization)
219
GRCh38
155
hg19
Lab
317
AMP-T2D consortium
25
Patrick T. Ellinor, Broad
target.investigated_as!
narrow histone mark
biosample_type!
primary cell
lab.title!
Bing Ren, UCSD
BIOSAMPLE
ASSAY
342 results
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single cell RNA-seq
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
18
26
3
2
3
4
1
1
1
left cardiac atrium
18
25
1
coronary artery
3
1
36
2
heart
1
10
4
18
1
1
1
heart right ventricle
17
9
1
1
2
1
1
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cell line
smooth muscle cell of the coronary artery
6
52
8
in vitro differentiated cells
cardiac fibroblast
1
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