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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
total RNA-seq
31
ATAC-seq
23
ChIP-seq
6
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
Hi-C
1
RNA microarray
Assay category
38
Transcription
32
DNA accessibility
23
DNA binding
1
3D chromatin structure
Target of assay
27
histone
27
histone modification
narrow histone mark
13
broad histone mark
9
control
4
transcription factor
3
RNA binding protein
3
nucleotide modification
1
chromatin remodeller
Date released
26
February, 2021
24
May, 2021
15
February, 2023
12
December, 2017
12
November, 2019
6
November, 2020
4
March, 2020
2
August, 2021
2
October, 2019
1
December, 2019
Available data
61
bam
56
bigWig
40
tsv
31
bed narrowPeak
12
fastq
10
bigBed narrowPeak
2
tagAlign
1
bedpe bed3+
1
hic
Organism
103
Homo sapiens
Biosample type
primary cell
73
cell line
16
in vitro differentiated cells
15
tissue
Organ
719
liver
616
connective tissue
477
adipose tissue
438
pancreas
342
heart
308
kidney
181
blood vessel
181
vasculature
158
bone element
151
brain
133
artery
107
limb
104
epithelium
73
musculature of body
60
blood
60
bodily fluid
54
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
102
AMP
2
T1D
Genome assembly (visualization)
70
hg19
55
GRCh38
Lab
98
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
73
inconsistent ontology term
1
audit script error
target.investigated_as!
narrow histone mark
biosample_type!
primary cell
month_released!
July, 2018
BIOSAMPLE
ASSAY
104 results
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total RNA-seq
ATAC-seq
ChIP-seq
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
Hi-C
RNA microarray
cell line
EndoC_BH1
33
19
9
6
2
1
1
glomerular visceral epithelial cell
1
1
in vitro differentiated cells
hepatocyte
10
Hepatic endoderm
2
pancreatic PP cell
2
endothelial cell
1
intermediate endothelial cell
1
tissue
pigmented layer of retina
2
12
renal glomerulus
1
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