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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ATAC-seq
27
ChIP-seq
17
total RNA-seq
10
snATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
pCHi-C
Assay category
44
DNA accessibility
27
DNA binding
17
Transcription
Target of assay
20
histone
20
histone modification
12
transcription factor
10
broad histone mark
narrow histone mark
5
RNA binding protein
5
control
Date released
39
May, 2021
24
May, 2022
23
February, 2023
8
January, 2021
Available data
24
bam
24
fastq
18
bed narrowPeak
6
txt
5
bigWig
Organism
94
Homo sapiens
Biosample type
primary cell
52
tissue
37
in vitro differentiated cells
5
cell line
Organ
51
pancreas
1
thymus
Project
62
AMP
32
T1D
Genome assembly (visualization)
23
hg19
Lab
2959
AMP-T2D consortium
142
Katalin Susztak, Upenn
94
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
36
Bing Ren, UCSD
25
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
target.investigated_as!
narrow histone mark
biosample_type!
primary cell
month_released!
November, 2019
BIOSAMPLE
ASSAY
94 results
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ATAC-seq
ChIP-seq
total RNA-seq
snATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
pCHi-C
tissue
islet of Langerhans
29
11
6
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
5
27
5
cell line
EndoC_BH1
3
2
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