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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
621
ChIP-seq
180
DNase-seq
5
ATAC-seq
4
FAIRE-seq
Assay category
621
DNA binding
189
DNA accessibility
Target of assay
395
transcription factor
344
histone
344
histone modification
221
broad histone mark
narrow histone mark
83
RNA binding protein
81
recombinant protein
33
chromatin remodeller
5
other context
5
other post-translational modification
Date released
281
November, 2017
163
June, 2019
73
November, 2018
60
May, 2019
43
December, 2017
42
April, 2019
42
October, 2019
34
October, 2018
30
December, 2018
18
January, 2019
17
August, 2017
5
October, 2017
2
July, 2019
Available data
2453
bam
2206
bigWig
1316
tsv
1190
bed narrowPeak
860
fastq
810
bigBed narrowPeak
252
bed broadPeak
230
bigBed broadPeak
223
bed bed3+
171
tagAlign
161
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
vcf
Organism
806
Homo sapiens
Biosample type
453
tissue
345
cell line
primary cell
12
in vitro differentiated cells
Organ
342
liver
86
brain
80
kidney
70
limb
68
heart
53
blood
53
bodily fluid
50
pancreas
44
blood vessel
44
vasculature
36
musculature of body
19
artery
18
nerve
18
ureter
12
connective tissue
11
spleen
10
epithelium
9
adipose tissue
3
eye
Project
810
AMP
Genome assembly (visualization)
771
GRCh38
754
hg19
Lab
810
AMP-T2D consortium
Audit category:
28
inconsistent control
1
inconsistent ontology term
Audit category:
13
missing controlled_by
Audit category:
23
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
target.investigated_as!
narrow histone mark
biosample_type!
primary cell
organ_slims!
embryo
BIOSAMPLE
ASSAY
810 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
37
2
body of pancreas
20
4
kidney
10
13
1
heart
5
18
heart left ventricle
20
3
+ See 53 more…
cell line
HepG2
287
GM12878
53
Panc1
3
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
hepatocyte
9
adipocyte
1
2
See all biosamples
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