Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
75
ChIP-seq
68
total RNA-seq
47
ATAC-seq
27
DNase-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
162
Transcription
75
DNA binding
74
DNA accessibility
9
DNA methylation
3
3D chromatin structure
Target of assay
95
histone
95
histone modification
57
broad histone mark
narrow histone mark
18
control
transcription factor
10
RNA binding protein
Date released
92
August, 2021
62
February, 2021
37
April, 2019
36
February, 2023
27
June, 2019
20
July, 2019
20
May, 2024
13
May, 2019
7
March, 2020
6
October, 2019
3
February, 2020
3
May, 2021
Available data
166
bam
164
tsv
160
bigWig
131
bed narrowPeak
61
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
3
bedpe bed3+
3
hic
2
tagAlign
Organism
326
Homo sapiens
Biosample type
263
tissue
62
cell line
primary cell
1
in vitro differentiated cells
Organ
577
connective tissue
539
pancreas
460
adipose tissue
381
liver
326
heart
300
kidney
174
blood vessel
174
vasculature
158
bone element
151
brain
128
artery
107
limb
100
epithelium
73
musculature of body
54
eye
35
nerve
26
embryo
20
lung
18
ureter
17
spleen
16
skeleton
9
blood
9
bodily fluid
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
326
AMP
Genome assembly (visualization)
203
GRCh38
144
hg19
Lab
306
AMP-T2D consortium
20
Patrick T. Ellinor, Broad
target.investigated_as!
narrow histone mark
transcription factor
biosample_type!
primary cell
BIOSAMPLE
ASSAY
326 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
18
21
3
2
3
4
1
1
1
coronary artery
2
1
36
2
left cardiac atrium
18
20
1
heart
1
10
4
18
1
1
1
heart right ventricle
17
9
1
1
2
1
1
+ See 10 more…
cell line
smooth muscle cell of the coronary artery
2
52
8
in vitro differentiated cells
cardiac fibroblast
1
See all biosamples
Download