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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
380
ChIP-seq
Assay category
380
DNA binding
Target of assay
780
histone modification
779
histone
504
transcription factor
narrow histone mark
379
broad histone mark
308
control
104
RNA binding protein
89
recombinant protein
35
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
94
August, 2017
56
May, 2019
50
November, 2017
43
October, 2019
37
April, 2019
20
May, 2024
19
October, 2018
15
December, 2017
10
May, 2021
10
October, 2017
8
August, 2021
8
February, 2018
6
November, 2019
4
January, 2019
Available data
310
bigWig
309
bed narrowPeak
279
bam
221
bigBed narrowPeak
96
tagAlign
86
fastq
28
bed broadPeak
11
bed bed3+
8
bigBed broadPeak
Organism
376
Homo sapiens
Biosample type
303
tissue
primary cell
57
in vitro differentiated cells
19
cell line
1
stem cell
Organ
70
brain
57
heart
51
pancreas
41
connective tissue
41
liver
36
blood vessel
36
vasculature
34
limb
20
adipose tissue
16
musculature of body
16
nerve
14
artery
13
epithelium
10
kidney
4
embryo
4
spleen
Project
380
AMP
Genome assembly (visualization)
297
GRCh38
254
hg19
Lab
349
AMP-T2D consortium
20
Patrick T. Ellinor, Broad
10
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
6
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
15
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
narrow histone mark
biosample_type!
primary cell
BIOSAMPLE
ASSAY
380 results
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Clear Filters
ChIP-seq
tissue
liver
22
left cardiac atrium
20
subcutaneous abdominal adipose tissue
20
tibial nerve
16
heart left ventricle
15
+ See 26 more…
in vitro differentiated cells
adipocyte
21
embryonic stem cell
11
hepatocyte
7
neural progenitor cell
7
pancreatic endoderm
4
+ See 5 more…
cell line
HepG2
9
EndoC_BH1
6
Panc1
4
stem cell
hESC
1
See all biosamples
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