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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
85
single cell RNA-seq
56
snATAC-seq
49
ATAC-seq
47
WGBS
44
ChIP-seq
16
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
279
Transcription
105
DNA accessibility
47
DNA methylation
44
DNA binding
4
3D chromatin structure
Target of assay
86
histone
86
histone modification
44
broad histone mark
narrow histone mark
Date released
134
May, 2022
111
May, 2021
81
February, 2023
59
September, 2020
45
February, 2021
45
May, 2020
8
January, 2021
7
August, 2020
5
March, 2023
3
October, 2022
2
March, 2020
Available data
169
fastq
153
zippedFastqFolder
152
bigWig
142
bam
104
tsv
44
bed narrowPeak
44
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
496
Homo sapiens
Biosample type
489
primary cell
tissue
9
cell line
2
stem cell
Organ
154
epithelium
154
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
AMP
324
HPAP
171
T1D
4
community
1
ITG
Genome assembly (visualization)
153
GRCh38
145
hg19
Lab
324
Klaus Kaestner, Upenn
169
Kyle Gaulton, UCSD
4
Anna Gloyn, Oxford
2
AMP-T2D consortium
1
ITG
Audit category:
30
audit script error
7
inconsistent ontology term
target.investigated_as!
narrow histone mark
biosample_type!
tissue
award.project!
AMP
BIOSAMPLE
ASSAY
500 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
ChIP-seq
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
1
monocyte
53
44
1
pancreatic beta cell
11
16
16
1
exocrine cell
39
+ See 37 more…
cell line
EndoC_BH1
2
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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