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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
330
ChIP-seq
104
total RNA-seq
10
ATAC-seq
2
DNase-seq
1
Hi-C
1
WGBS
Assay category
330
DNA binding
104
Transcription
12
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
309
transcription factor
88
recombinant protein
58
RNA binding protein
32
histone
32
histone modification
28
chromatin remodeller
16
broad histone mark
narrow histone mark
2
other context
2
other post-translational modification
Date released
211
November, 2017
92
February, 2021
57
November, 2018
27
December, 2018
19
January, 2019
17
October, 2019
9
November, 2019
8
August, 2021
4
March, 2020
4
May, 2021
Available data
447
bam
438
bigWig
342
bed narrowPeak
314
fastq
313
bigBed narrowPeak
104
tsv
40
bed broadPeak
40
bigBed broadPeak
10
tagAlign
2
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
448
Homo sapiens
Biosample type
1583
tissue
448
cell line
434
primary cell
225
in vitro differentiated cells
2
stem cell
Organ
262
liver
64
artery
64
blood vessel
64
heart
64
vasculature
53
blood
53
bodily fluid
46
pancreas
43
epithelium
12
kidney
8
embryo
Project
446
AMP
2
T1D
Genome assembly (visualization)
511
hg19
448
GRCh38
Lab
448
AMP-T2D consortium
Audit category:
51
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
4
missing controlled_by
Audit category:
18
inconsistent control read length
6
inconsistent control run_type
1
inconsistent assembly
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
448 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
255
5
1
1
smooth muscle cell of the coronary artery
4
52
8
GM12878
53
EndoC_BH1
7
33
1
H1-hESC
8
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