Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
394
ChIP-seq
80
total RNA-seq
10
ATAC-seq
6
pCHi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Hi-C
2
HiChIP
1
DNase-seq
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
394
DNA binding
82
Transcription
11
DNA accessibility
2
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
316
transcription factor
89
recombinant protein
72
control
60
RNA binding protein
26
chromatin remodeller
5
histone
5
histone modification
narrow histone mark
1
broad histone mark
1
other context
1
other post-translational modification
Date released
256
November, 2017
70
February, 2021
61
November, 2018
40
August, 2021
28
December, 2018
22
January, 2019
15
October, 2019
6
March, 2020
5
February, 2023
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
511
bam
456
bigWig
419
fastq
374
bed narrowPeak
341
bigBed narrowPeak
85
tsv
bed broadPeak
52
bigBed broadPeak
15
tagAlign
3
tar
1
bed bed3
1
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
txt
1
vcf
Organism
505
Homo sapiens
Biosample type
1798
tissue
617
primary cell
508
cell line
336
in vitro differentiated cells
9
stem cell
Organ
340
liver
pancreas
73
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
60
blood
60
bodily fluid
19
kidney
8
embryo
1
mammary gland
Project
501
AMP
5
T1D
2
community
Genome assembly (visualization)
410
hg19
363
GRCh38
Lab
469
AMP-T2D consortium
32
Bing Ren, UCSD
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
16
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
13
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
narrow histone mark
organ_slims!
pancreas
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
508 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
STARR-seq
CRISPR genome editing followed by DNA sequencing
Hi-C
HiChIP
DNase-seq
MPRA
WGBS
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
HepG2
317
14
1
2
2
2
1
1
smooth muscle cell of the coronary artery
6
52
8
GM12878
59
1
H1-hESC
8
EndoC_BH1
3
2
+ See 13 more…
See all biosamples
Download