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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
245
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
163
ChIP-seq
56
snATAC-seq
47
WGBS
16
pCHi-C
10
RRBS
6
Hi-C
4
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
434
Transcription
261
DNA accessibility
163
DNA binding
58
DNA methylation
6
3D chromatin structure
Target of assay
234
histone
234
histone modification
121
broad histone mark
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
152
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
59
September, 2020
58
September, 2018
48
July, 2018
47
February, 2021
43
April, 2018
37
August, 2017
27
July, 2019
23
October, 2019
20
June, 2019
8
January, 2021
7
August, 2020
6
November, 2017
5
December, 2019
5
November, 2020
5
September, 2017
4
May, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2018
Available data
506
bam
501
bigWig
369
fastq
270
tsv
191
bed narrowPeak
153
zippedFastqFolder
83
bigBed narrowPeak
53
tagAlign
41
bed broadPeak
41
bigBed broadPeak
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
938
Homo sapiens
Biosample type
2229
tissue
938
primary cell
640
cell line
318
in vitro differentiated cells
7
stem cell
Organ
352
epithelium
315
pancreas
27
connective tissue
21
kidney
21
vasculature
18
blood vessel
14
vein
10
brain
9
musculature of body
8
blood
8
bodily fluid
8
heart
8
liver
3
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
449
AMP
324
HPAP
164
T1D
1
ITG
Genome assembly (visualization)
488
hg19
406
GRCh38
Lab
426
AMP-T2D consortium
324
Klaus Kaestner, Upenn
187
Kyle Gaulton, UCSD
1
ITG
Audit category:
42
inconsistent ontology term
31
audit script error
Audit category:
21
missing controlled_by
Audit category:
1
inconsistent assembly
target.investigated_as!
narrow histone mark
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
938 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
pCHi-C
RRBS
Hi-C
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
pancreatic alpha cell
52
35
12
9
31
1
Langerhans cell
85
48
monocyte
54
15
44
1
1
pancreatic beta cell
21
23
12
9
16
1
exocrine cell
39
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