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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
228
ChIP-seq
192
DNase-seq
89
total RNA-seq
7
WGBS
5
ATAC-seq
2
RRBS
1
FAIRE-seq
Assay category
228
DNA binding
198
DNA accessibility
89
Transcription
9
DNA methylation
Target of assay
218
histone modification
217
histone
117
broad histone mark
narrow histone mark
58
control
51
transcription factor
12
RNA binding protein
3
chromatin remodeller
Date released
715
February, 2021
368
November, 2017
335
May, 2021
317
August, 2017
314
May, 2020
308
August, 2021
207
June, 2019
205
February, 2023
200
May, 2022
173
October, 2019
168
July, 2018
86
May, 2019
85
July, 2019
81
November, 2018
78
December, 2017
65
October, 2018
61
March, 2020
59
September, 2020
58
September, 2018
57
April, 2019
57
November, 2019
49
April, 2018
47
September, 2023
35
December, 2018
31
February, 2018
27
January, 2019
25
February, 2020
25
May, 2024
21
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
437
bam
411
bigWig
291
bed narrowPeak
235
fastq
229
bigBed narrowPeak
214
bed bed3+
213
bed broadPeak
197
bigBed broadPeak
89
tsv
56
tagAlign
6
bed bedMethyl
bigBed bedMethyl
Organism
519
Homo sapiens
Biosample type
392
tissue
80
primary cell
52
in vitro differentiated cells
Organ
158
pancreas
109
connective tissue
80
kidney
56
musculature of body
44
adipose tissue
42
liver
39
epithelium
33
heart
32
limb
30
brain
18
ureter
7
vasculature
6
eye
5
blood vessel
2
artery
Project
524
AMP
Genome assembly (visualization)
394
GRCh38
388
hg19
Lab
524
AMP-T2D consortium
Audit category:
18
inconsistent ontology term
Audit category:
28
missing controlled_by
Audit category:
9
inconsistent control read length
2
inconsistent assembly
target.investigated_as!
narrow histone mark
files.file_type!
bigBed bedMethyl
BIOSAMPLE
ASSAY
524 results
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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
WGBS
ATAC-seq
RRBS
FAIRE-seq
tissue
islet of Langerhans
28
1
89
1
liver
35
3
subcutaneous abdominal adipose tissue
25
3
heart
18
muscle of arm
17
+ See 42 more…
primary cell
skeletal muscle myoblast
9
2
pancreatic alpha cell
9
1
pancreatic beta cell
9
1
cardiac fibroblast
3
3
mesenchymal stem cell
5
+ See 22 more…
in vitro differentiated cells
adipocyte
51
1
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