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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
43
ATAC-seq
20
ChIP-seq
3
Hi-C
3
pCHi-C
3
total RNA-seq
2
RRBS
2
WGBS
Assay category
96
Transcription
43
DNA accessibility
20
DNA binding
4
DNA methylation
3
3D chromatin structure
Target of assay
20
control
Date released
92
August, 2021
36
February, 2023
10
April, 2019
10
February, 2021
6
May, 2019
5
March, 2020
4
July, 2019
3
February, 2020
2
June, 2019
1
October, 2019
Available data
187
bam
168
tsv
bigWig
126
bed narrowPeak
72
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
169
Homo sapiens
Biosample type
156
tissue
10
cell line
3
primary cell
Organ
319
pancreas
223
kidney
222
epithelium
169
heart
161
liver
101
bone element
99
connective tissue
80
vasculature
79
blood vessel
56
adipose tissue
56
artery
53
brain
53
eye
30
limb
26
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
7
embryo
6
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
169
AMP
Genome assembly (visualization)
43
GRCh38
13
hg19
Lab
169
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
target.investigated_as!
narrow histone mark
files.file_type!
bigWig
BIOSAMPLE
ASSAY
169 results
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single cell RNA-seq
ATAC-seq
ChIP-seq
Hi-C
pCHi-C
total RNA-seq
RRBS
WGBS
tissue
coronary artery
35
2
1
heart left ventricle
18
6
1
1
1
2
heart right ventricle
17
2
1
1
right cardiac atrium
18
1
1
left cardiac atrium
18
+ See 10 more…
cell line
smooth muscle cell of the coronary artery
8
2
primary cell
cardiac fibroblast
2
1
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