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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
558
ChIP-seq
259
ATAC-seq
178
DNase-seq
106
total RNA-seq
85
RNA microarray
71
single cell RNA-seq
28
snATAC-seq
27
WGBS
16
Hi-C
11
RRBS
5
pCHi-C
4
FAIRE-seq
4
MeRIP-seq
Assay category
558
DNA binding
469
DNA accessibility
177
Transcription
38
DNA methylation
16
3D chromatin structure
Target of assay
593
histone modification
592
histone
narrow histone mark
283
broad histone mark
187
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
163
June, 2019
145
August, 2017
130
August, 2021
105
October, 2019
93
February, 2021
91
February, 2023
82
May, 2019
66
May, 2022
63
October, 2018
57
April, 2019
54
November, 2017
47
September, 2023
46
December, 2017
30
July, 2019
26
November, 2018
23
May, 2020
21
November, 2019
21
October, 2017
19
April, 2020
15
May, 2023
10
March, 2020
8
January, 2021
7
December, 2018
6
September, 2017
5
January, 2019
5
March, 2019
4
July, 2018
4
November, 2020
2
January, 2018
2
May, 2021
1
August, 2022
1
December, 2019
Available data
1664
bam
1479
bigWig
tsv
693
bed narrowPeak
453
bigBed narrowPeak
349
fastq
199
bed bed3+
198
bed broadPeak
176
bigBed broadPeak
157
txt
128
tagAlign
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1345
Homo sapiens
Biosample type
1352
tissue
703
primary cell
524
cell line
208
in vitro differentiated cells
5
stem cell
Organ
277
kidney
198
pancreas
163
liver
139
heart
128
brain
101
blood vessel
101
vasculature
100
bone element
100
limb
77
adipose tissue
77
connective tissue
66
musculature of body
63
artery
49
eye
30
nerve
22
spleen
19
lung
18
ureter
16
skeleton
12
epithelium
1
pericardium
1
pituitary gland
1
skin of body
1
thymus
Project
1257
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
666
GRCh38
598
hg19
Lab
1041
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
86
inconsistent ontology term
27
inconsistent control
2
audit script error
Audit category:
22
missing controlled_by
Audit category:
3
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
narrow histone mark
files.file_type!
tsv
BIOSAMPLE
ASSAY
1352 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
RNA microarray
single cell RNA-seq
snATAC-seq
WGBS
Hi-C
RRBS
pCHi-C
FAIRE-seq
MeRIP-seq
tissue
kidney
17
75
13
49
59
6
1
1
1
islet of Langerhans
34
67
1
31
7
3
1
4
1
4
liver
103
20
2
20
1
3
1
1
bone element
84
coronary artery
3
36
2
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