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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ATAC-seq
49
total RNA-seq
32
ChIP-seq
8
single cell RNA-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
82
DNA accessibility
57
Transcription
32
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
368
November, 2017
234
August, 2017
207
June, 2019
200
May, 2022
189
February, 2023
185
August, 2021
162
May, 2021
157
October, 2019
156
February, 2021
125
May, 2020
88
November, 2018
86
May, 2019
78
December, 2017
63
October, 2018
59
September, 2020
57
April, 2019
47
September, 2023
43
July, 2019
37
November, 2019
35
December, 2018
32
September, 2018
22
January, 2019
21
October, 2017
19
April, 2020
16
February, 2018
16
January, 2021
16
March, 2020
15
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
tsv
95
bed narrowPeak
64
xls
57
txt
40
bam
36
bigWig
15
tagAlign
3
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
184
Homo sapiens
Biosample type
130
tissue
28
in vitro differentiated cells
25
cell line
2
primary cell
Organ
130
kidney
22
liver
5
connective tissue
4
epithelium
3
pancreas
1
adipose tissue
Project
185
AMP
Genome assembly (visualization)
81
GRCh38
34
hg19
Lab
128
Katalin Susztak, Upenn
29
AMP-T2D consortium
24
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
target.investigated_as!
narrow histone mark
files.file_type!
tsv
BIOSAMPLE
ASSAY
185 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
64
49
8
6
1
islet of Langerhans
1
subcutaneous adipose tissue
1
in vitro differentiated cells
neural progenitor cell
10
14
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
16
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
primary cell
hepatocyte
2
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