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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
DNase-seq
49
ChIP-seq
Assay category
205
DNA accessibility
49
DNA binding
Target of assay
36
transcription factor
26
histone
26
histone modification
13
broad histone mark
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
42
November, 2017
9
November, 2018
8
August, 2017
7
October, 2019
1
November, 2020
Available data
2566
bam
2497
bigWig
1400
tsv
1209
bed narrowPeak
850
bigBed narrowPeak
843
fastq
263
bed broadPeak
254
bigBed broadPeak
245
bed bed3+
111
tagAlign
64
xls
17
bed bedMethyl
17
bigBed bedMethyl
2
bed bed3
1
hdf5
1
hic
Organism
254
Homo sapiens
Biosample type
176
tissue
40
cell line
37
primary cell
1
in vitro differentiated cells
Organ
78
kidney
44
liver
36
limb
35
brain
33
musculature of body
30
heart
18
epithelium
18
ureter
13
vasculature
10
blood vessel
9
connective tissue
7
pancreas
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
254
AMP
Genome assembly (visualization)
254
GRCh38
248
hg19
Lab
254
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
7
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
254 results
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Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 39 more…
cell line
HepG2
39
Panc1
1
primary cell
skeletal muscle myoblast
7
cardiac fibroblast
3
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
+ See 18 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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