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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
DNase-seq
65
ChIP-seq
Assay category
205
DNA accessibility
65
DNA binding
Target of assay
49
transcription factor
30
histone
30
histone modification
16
broad histone mark
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
55
November, 2017
9
August, 2017
9
November, 2018
9
October, 2019
1
November, 2020
Available data
2737
bam
2485
bigWig
1469
tsv
1271
bed narrowPeak
1140
fastq
881
bigBed narrowPeak
292
bed broadPeak
270
bigBed broadPeak
239
bed bed3+
196
tagAlign
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
vcf
Organism
270
Homo sapiens
Biosample type
176
tissue
53
cell line
41
primary cell
in vitro differentiated cells
Organ
78
kidney
57
liver
36
limb
35
brain
33
musculature of body
30
heart
20
epithelium
18
ureter
15
vasculature
12
blood vessel
8
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
270
AMP
Genome assembly (visualization)
253
GRCh38
247
hg19
Lab
270
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
8
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
narrow histone mark
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
270 results
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Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 39 more…
cell line
HepG2
52
Panc1
1
primary cell
skeletal muscle myoblast
1
8
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
+ See 18 more…
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