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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
309
ChIP-seq
207
DNase-seq
27
ATAC-seq
5
FAIRE-seq
Assay category
309
DNA binding
239
DNA accessibility
Target of assay
371
histone
371
histone modification
232
broad histone mark
narrow histone mark
77
transcription factor
32
RNA binding protein
4
chromatin remodeller
3
other context
3
other post-translational modification
Date released
199
June, 2019
63
May, 2019
45
October, 2019
43
December, 2017
42
April, 2019
41
November, 2017
34
October, 2018
30
August, 2017
17
November, 2018
14
September, 2018
5
October, 2017
5
September, 2017
4
January, 2019
3
December, 2018
2
July, 2019
1
November, 2020
Available data
2422
bam
2201
bigWig
1481
tsv
977
bed narrowPeak
829
fastq
548
bigBed narrowPeak
257
bed bed3+
240
bed broadPeak
218
bigBed broadPeak
209
tagAlign
160
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
ibed
1
bedpe
1
tar
Organism
544
Homo sapiens
Biosample type
453
tissue
cell line
83
primary cell
12
in vitro differentiated cells
Organ
94
brain
93
kidney
72
heart
70
limb
68
pancreas
60
epithelium
58
vasculature
57
liver
55
blood vessel
41
musculature of body
23
connective tissue
19
artery
18
nerve
18
ureter
11
spleen
9
adipose tissue
8
vein
5
eye
Project
548
AMP
Genome assembly (visualization)
537
GRCh38
489
hg19
Lab
548
AMP-T2D consortium
Audit category:
27
inconsistent control
15
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
3
inconsistent control read length
2
inconsistent assembly
target.investigated_as!
narrow histone mark
biosample_type!
cell line
BIOSAMPLE
ASSAY
548 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
37
2
body of pancreas
20
4
kidney
10
13
1
heart
5
18
heart left ventricle
20
3
+ See 53 more…
primary cell
skeletal muscle myoblast
8
2
endothelial cell of umbilical vein
5
2
1
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
+ See 24 more…
in vitro differentiated cells
hepatocyte
9
adipocyte
1
2
See all biosamples
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