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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
46
ChIP-seq
11
DNase-seq
1
FAIRE-seq
Assay category
46
DNA binding
12
DNA accessibility
Target of assay
66
histone
66
histone modification
41
broad histone mark
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
25
May, 2019
24
October, 2019
7
June, 2019
2
November, 2017
Available data
159
bam
130
bigWig
108
bed narrowPeak
68
tsv
58
bigBed narrowPeak
15
bed broadPeak
15
bigBed broadPeak
13
bed bed3+
6
tagAlign
4
fastq
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
58
Homo sapiens
Biosample type
44
tissue
14
primary cell
Organ
344
liver
94
brain
94
kidney
72
heart
72
pancreas
70
limb
61
epithelium
58
vasculature
55
blood vessel
53
blood
53
bodily fluid
41
musculature of body
23
connective tissue
19
artery
18
nerve
18
ureter
11
spleen
9
adipose tissue
8
vein
5
eye
Project
58
AMP
Genome assembly (visualization)
57
GRCh38
57
hg19
Lab
58
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
58 results
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ChIP-seq
DNase-seq
FAIRE-seq
tissue
tibial artery
14
2
ascending aorta
9
1
thoracic aorta
8
aorta
7
coronary artery
1
2
primary cell
endothelial cell of umbilical vein
5
2
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
kidney capillary endothelial cell
1
smooth muscle cell of the brain vasculature
1
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