Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
Hi-C
11
ATAC-seq
Assay category
17
3D chromatin structure
11
DNA accessibility
Date released
10
February, 2023
9
March, 2020
3
October, 2019
2
August, 2021
2
November, 2019
1
February, 2021
1
March, 2019
Available data
2481
bam
2228
bigWig
1330
tsv
1197
bed narrowPeak
879
fastq
810
bigBed narrowPeak
252
bed broadPeak
230
bigBed broadPeak
225
bed bed3+
171
tagAlign
161
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
vcf
Organism
28
Homo sapiens
Biosample type
16
tissue
9
in vitro differentiated cells
primary cell
3
cell line
Organ
5
connective tissue
4
bone element
4
pancreas
4
skeleton
3
heart
3
liver
2
musculature of body
1
blood vessel
1
brain
1
epithelium
1
kidney
1
vasculature
Project
28
AMP
Genome assembly (visualization)
28
hg19
1
GRCh38
Lab
25
AMP-T2D consortium
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Audit category:
5
inconsistent ontology term
1
inconsistent replicate
target.investigated_as!
narrow histone mark
biosample_type!
primary cell
BIOSAMPLE
ASSAY
28 results
search-icon
table-tab-icon
Clear Filters
Hi-C
ATAC-seq
tissue
islet of Langerhans
2
psoas muscle
2
acetabular part of hip bone
1
aorta
1
brain
1
+ See 9 more…
in vitro differentiated cells
chondrocyte
5
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
HepG2
1
1
EndoC_BH1
1
See all biosamples
Download