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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
3
Hi-C
1
whole genome sequencing assay
Assay category
3
3D chromatin structure
1
DNA sequencing
Date released
3
October, 2022
1
August, 2021
Available data
2987
bam
2704
bigWig
1600
tsv
1363
bed narrowPeak
1248
fastq
893
bigBed narrowPeak
293
bed broadPeak
271
bigBed broadPeak
260
bed bed3+
224
tagAlign
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
4
Homo sapiens
Biosample type
3
primary cell
1
cell line
Organ
3
epithelium
3
pancreas
1
liver
Project
3
HPAP
1
AMP
Genome assembly (visualization)
3
hg19
Lab
3
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
Audit category:
3
audit script error
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
4 results
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Hi-C
whole genome sequencing assay
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
HepG2
1
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